simuran
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SIMURAN overview
simuran package
simuran
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Index
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A
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B
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C
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D
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E
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F
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G
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H
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I
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K
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L
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M
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N
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O
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P
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R
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S
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T
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U
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V
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W
_
_last_loaded_idx (simuran.recording_container.RecordingContainer attribute)
A
add_analysis() (simuran.analysis.analysis_handler.AnalysisHandler method)
AllenVBNBridge (class in simuran.bridges.allen_vbn_bridge)
AnalysisHandler (class in simuran.analysis.analysis_handler)
append() (simuran.core.base_container.GenericContainer method)
attrs (simuran.core.base_class.BaseSimuran attribute)
(simuran.core.param_handler.ParamHandler attribute)
(simuran.recording.Recording attribute)
(simuran.recording_container.RecordingContainer attribute)
available_data (simuran.recording.Recording attribute)
B
BaseLoader (class in simuran.loaders.base_loader)
BaseNode (class in simuran.ui.node)
BaseSignal (class in simuran.core.base_signal)
BaseSimuran (class in simuran.core.base_class)
bin_spike_train() (in module simuran.analysis.unit)
brain_regions_in_structure() (simuran.bridges.allen_vbn_bridge.AllenVBNBridge static method)
C
ccf_unit_plot() (in module simuran.plot.unit)
channel (simuran.core.base_signal.BaseSignal attribute)
,
[1]
channel_type (simuran.core.base_signal.BaseSignal attribute)
,
[1]
(simuran.core.base_signal.Eeg attribute)
clear() (simuran.core.param_handler.ParamHandler method)
close() (simuran.plot.figure.SimuranFigure method)
closed (simuran.plot.figure.SimuranFigure attribute)
config_from_file() (in module simuran)
container (simuran.core.base_container.GenericContainer attribute)
conversion (simuran.core.base_signal.BaseSignal attribute)
,
[1]
convert_filter() (in module simuran.core.utils)
convert_signals_to_mne() (in module simuran.bridges.mne_bridge)
create() (simuran.ui.node.BaseNode method)
(simuran.ui.node.NodeFactory method)
create_code_block() (in module simuran.ui.node_elements)
create_file_select() (in module simuran.ui.node_elements)
create_input() (in module simuran.ui.node_elements)
create_parameter() (in module simuran.ui.node_elements)
D
data (simuran.core.base_class.BaseSimuran attribute)
,
[1]
(simuran.recording.Recording attribute)
datetime (simuran.core.base_class.BaseSimuran attribute)
(simuran.recording.Recording attribute)
default_formatter() (in module simuran.core.log_handler)
default_log_location() (in module simuran.core.log_handler)
default_name() (simuran.core.base_signal.BaseSignal method)
default_scalings() (in module simuran.bridges.mne_bridge)
despine() (in module simuran.plot.base_plot)
dict_from_string() (in module simuran.ui.common)
dirname_replacement (simuran.core.param_handler.ParamHandler attribute)
,
[1]
done (simuran.plot.figure.SimuranFigure attribute)
dump() (simuran.recording_container.RecordingContainer method)
E
Eeg (class in simuran.core.base_signal)
establish_main_logger() (in module simuran.core.log_handler)
extend() (simuran.core.base_container.GenericContainer method)
F
figure (simuran.plot.figure.SimuranFigure attribute)
filename (simuran.plot.figure.SimuranFigure attribute)
fill_timestamps() (simuran.core.base_signal.BaseSignal method)
filter() (simuran.core.base_signal.BaseSignal method)
filter_good_units() (simuran.bridges.allen_vbn_bridge.AllenVBNBridge method)
filter_table() (simuran.recording_container.RecordingContainer method)
find_loader_class() (in module simuran.loaders.loader_list)
find_matching_input_node() (simuran.ui.node.BaseNode method)
find_recording_by_attribute() (simuran.recording_container.RecordingContainer method)
find_recording_with_source() (simuran.recording_container.RecordingContainer method)
fn_kwargs_list (simuran.analysis.analysis_handler.AnalysisHandler attribute)
fn_param_list (simuran.analysis.analysis_handler.AnalysisHandler attribute)
fns_to_run (simuran.analysis.analysis_handler.AnalysisHandler attribute)
from_numpy() (simuran.core.base_signal.BaseSignal class method)
from_table() (simuran.recording_container.RecordingContainer class method)
G
GenericContainer (class in simuran.core.base_container)
get() (simuran.core.param_handler.ParamHandler method)
get_attribute() (simuran.ui.node.BaseNode method)
get_attribute_with_label() (simuran.ui.node.BaseNode method)
get_attrs() (simuran.core.base_class.BaseSimuran method)
(simuran.core.base_container.GenericContainer method)
get_attrs_and_methods() (simuran.core.base_class.BaseSimuran method)
(simuran.core.base_container.GenericContainer method)
get_content_with_label() (simuran.ui.node.BaseNode method)
get_downstream_nodes() (simuran.ui.node.BaseNode method)
get_duration() (simuran.core.base_signal.BaseSignal method)
get_end() (simuran.core.base_signal.BaseSignal method)
get_name_for_save() (simuran.recording.Recording method)
get_node_factories() (in module simuran.ui.node_factories)
get_owning_attribute() (simuran.ui.node.BaseNode method)
get_plot_location() (in module simuran.plot.base_plot)
get_possible_values() (simuran.core.base_container.GenericContainer method)
get_property() (simuran.core.base_container.GenericContainer method)
get_results() (simuran.recording_container.RecordingContainer method)
get_samples_in_volts() (simuran.core.base_signal.BaseSignal method)
get_start() (simuran.core.base_signal.BaseSignal method)
get_value_of_label() (simuran.ui.node.BaseNode method)
get_values() (simuran.ui.node.BaseNode method)
group (simuran.core.base_signal.BaseSignal attribute)
,
[1]
group_by_property() (simuran.core.base_container.GenericContainer method)
H
handle_errors (simuran.analysis.analysis_handler.AnalysisHandler attribute)
,
[1]
has_attribute() (simuran.ui.node.BaseNode method)
I
in_range() (simuran.core.base_signal.BaseSignal method)
inspect() (simuran.core.base_class.BaseSimuran method)
(simuran.core.base_container.GenericContainer method)
InspectRecordingNode (class in simuran.ui.nodes.recording_node)
InspectRecordingNodeFactory (class in simuran.ui.nodes.recording_node)
installed_loaders() (in module simuran.loaders.loader_list)
invalid_recording_locations (simuran.recording_container.RecordingContainer attribute)
is_loaded() (simuran.core.base_class.BaseSimuran method)
(simuran.core.base_class.NoLoader method)
isdone() (simuran.plot.figure.SimuranFigure method)
items() (simuran.core.param_handler.ParamHandler method)
K
keys() (simuran.core.param_handler.ParamHandler method)
kwargs (simuran.plot.figure.SimuranFigure attribute)
L
last_loaded (simuran.recording_container.RecordingContainer attribute)
last_loaded_source (simuran.core.base_class.BaseSimuran attribute)
,
[1]
(simuran.recording.Recording attribute)
LFPViewNode (class in simuran.ui.nodes.lfp_node)
LFPViewNodeFactory (class in simuran.ui.nodes.lfp_node)
load() (simuran.core.base_class.BaseSimuran method)
(simuran.core.base_class.NoLoader method)
(simuran.core.base_container.GenericContainer method)
(simuran.core.base_signal.BaseSignal method)
(simuran.recording.Recording method)
(simuran.recording_container.RecordingContainer method)
load_config() (in module simuran)
load_iter() (simuran.recording_container.RecordingContainer method)
load_on_fly (simuran.recording_container.RecordingContainer attribute)
,
[1]
load_recording() (simuran.loaders.base_loader.BaseLoader method)
(simuran.loaders.base_loader.MetadataLoader method)
load_results_from_pickle() (simuran.analysis.analysis_handler.AnalysisHandler method)
load_setup() (simuran.ui.nodes.recording_node.RecordingNode method)
loader (simuran.core.base_class.BaseSimuran attribute)
,
[1]
(simuran.recording.Recording attribute)
loader_from_string() (in module simuran.loaders.loader_list)
log_exception() (in module simuran.core.log_handler)
M
MetadataLoader (class in simuran.loaders.base_loader)
N
name (simuran.core.param_handler.ParamHandler attribute)
,
[1]
NodeFactory (class in simuran.ui.node)
NoLoader (class in simuran.core.base_class)
O
on_connect() (simuran.ui.node.BaseNode method)
on_disconnect() (simuran.ui.node.BaseNode method)
output_filenames (simuran.plot.figure.SimuranFigure attribute)
P
ParamHandler (class in simuran.core.param_handler)
parse_metadata() (simuran.loaders.base_loader.BaseLoader method)
(simuran.loaders.base_loader.MetadataLoader method)
(simuran.recording.Recording method)
parse_table_row() (simuran.loaders.base_loader.BaseLoader method)
(simuran.loaders.base_loader.MetadataLoader method)
(simuran.recording.Recording method)
pickle_path (simuran.analysis.analysis_handler.AnalysisHandler attribute)
plot_signals() (in module simuran.plot.signal)
plot_unit_properties() (in module simuran.plot.unit)
pop() (simuran.core.param_handler.ParamHandler method)
process() (simuran.ui.node.BaseNode method)
(simuran.ui.nodes.lfp_node.LFPViewNode method)
(simuran.ui.nodes.python_node.PythonCodeNode method)
(simuran.ui.nodes.recording_node.InspectRecordingNode method)
(simuran.ui.nodes.recording_node.RecordingNode method)
PythonCodeNode (class in simuran.ui.nodes.python_node)
PythonCodeNodeFactory (class in simuran.ui.nodes.python_node)
R
read() (simuran.core.param_handler.ParamHandler method)
recorded_regions() (simuran.bridges.allen_vbn_bridge.AllenVBNBridge static method)
Recording (class in simuran.recording)
RecordingContainer (class in simuran.recording_container)
RecordingContainerLoadIterator (class in simuran.recording_container)
RecordingNode (class in simuran.ui.nodes.recording_node)
RecordingNodeFactory (class in simuran.ui.nodes.recording_node)
region (simuran.core.base_signal.BaseSignal attribute)
,
[1]
register_node_factory() (in module simuran.ui.node_factories)
reset() (simuran.analysis.analysis_handler.AnalysisHandler method)
results (simuran.analysis.analysis_handler.AnalysisHandler attribute)
(simuran.core.base_class.BaseSimuran attribute)
(simuran.recording.Recording attribute)
run() (simuran.analysis.analysis_handler.AnalysisHandler method)
S
samples (simuran.core.base_signal.BaseSignal attribute)
sampling_rate (simuran.core.base_signal.BaseSignal attribute)
,
[1]
save() (simuran.plot.figure.SimuranFigure method)
save_results_to_pickle() (simuran.analysis.analysis_handler.AnalysisHandler method)
save_results_to_table() (simuran.analysis.analysis_handler.AnalysisHandler method)
(simuran.recording_container.RecordingContainer method)
save_simuran_plot() (in module simuran.plot.base_plot)
savefig() (simuran.plot.figure.SimuranFigure method)
set_only_log_to_file() (in module simuran.core.log_handler)
set_plot_style() (in module simuran.plot.base_plot)
set_source_file() (simuran.ui.node.BaseNode method)
setdefault() (simuran.core.param_handler.ParamHandler method)
setup_ax() (in module simuran.plot.base_plot)
simuran (module)
simuran.analysis (module)
simuran.analysis.analysis_handler (module)
simuran.analysis.unit (module)
simuran.bridges (module)
simuran.bridges.allen_vbn_bridge (module)
simuran.bridges.mne_bridge (module)
simuran.core (module)
simuran.core.base_class (module)
simuran.core.base_container (module)
simuran.core.base_signal (module)
simuran.core.log_handler (module)
simuran.core.param_handler (module)
simuran.core.utils (module)
simuran.loaders (module)
simuran.loaders.base_loader (module)
simuran.loaders.loader_list (module)
simuran.plot (module)
simuran.plot.base_plot (module)
simuran.plot.figure (module)
simuran.plot.signal (module)
simuran.plot.unit (module)
simuran.recording (module)
simuran.recording_container (module)
simuran.ui (module)
simuran.ui.common (module)
simuran.ui.node (module)
simuran.ui.node_elements (module)
simuran.ui.node_factories (module)
simuran.ui.nodes (module)
simuran.ui.nodes.lfp_node (module)
simuran.ui.nodes.python_node (module)
simuran.ui.nodes.recording_node (module)
SimuranFigure (class in simuran.plot.figure)
source_file (simuran.core.base_class.BaseSimuran attribute)
,
[1]
(simuran.core.param_handler.ParamHandler attribute)
,
[1]
(simuran.recording.Recording attribute)
spike_train() (simuran.bridges.allen_vbn_bridge.AllenVBNBridge method)
split_into_groups() (simuran.core.base_container.GenericContainer method)
summarise() (simuran.recording.Recording method)
supported_loaders() (in module simuran.loaders.loader_list)
T
table (simuran.recording_container.RecordingContainer attribute)
tag (simuran.core.base_class.BaseSimuran attribute)
,
[1]
(simuran.recording.Recording attribute)
timestamps (simuran.core.base_signal.BaseSignal attribute)
,
[1]
to_str() (simuran.core.param_handler.ParamHandler method)
trial_info() (simuran.bridges.allen_vbn_bridge.AllenVBNBridge static method)
U
unload() (simuran.core.base_class.BaseSimuran method)
update() (simuran.core.param_handler.ParamHandler method)
update_kwargs() (simuran.plot.figure.SimuranFigure method)
V
values() (simuran.core.param_handler.ParamHandler method)
verbose (simuran.analysis.analysis_handler.AnalysisHandler attribute)
,
[1]
W
write() (simuran.core.param_handler.ParamHandler method)
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